J5_8R55_010

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

UUUAC*GUUUG*CG*CG*CGGAUAAAA

Length

23 nucleotides

Bulged bases

8R55|1|X|U|2105, 8R55|1|X|G|2457, 8R55|1|X|G|2458, 8R55|1|X|A|2459, 8R55|1|X|U|2460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8R55|1|X|U|2103
8R55|1|X|U|2104
8R55|1|X|U|2105
8R55|1|X|A|2106
8R55|1|X|C|2107
*
8R55|1|X|G|2271
8R55|1|X|U|2272
8R55|1|X|U|2273
8R55|1|X|U|2274
8R55|1|X|G|2275
*
8R55|1|X|C|2287
8R55|1|X|G|2288
*
8R55|1|X|C|2310
8R55|1|X|G|2311
*
8R55|1|X|C|2456
8R55|1|X|G|2457
8R55|1|X|G|2458
8R55|1|X|A|2459
8R55|1|X|U|2460
8R55|1|X|A|2461
8R55|1|X|A|2462
8R55|1|X|A|2463
8R55|1|X|A|2464

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain 3

Large ribosomal subunit protein bL35

Chain Z

Large ribosomal subunit protein uL2

Chain i

50S ribosomal protein L15

Chain u

Large ribosomal subunit protein bL27

Chain v

Large ribosomal subunit protein bL28