3D structure

PDB id
8R8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
8R8M|1|a|U|1758, 8R8M|1|a|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8R8M_007 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.036
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

8R8M|1|a|G|1674
8R8M|1|a|C|1675
8R8M|1|a|A|1676
8R8M|1|a|A|1677
8R8M|1|a|A|1678
8R8M|1|a|A|1679
8R8M|1|a|U|1680
8R8M|1|a|G|1681
8R8M|1|a|G|1682
*
8R8M|1|a|C|1706
8R8M|1|a|G|1707
*
8R8M|1|a|U|1751
8R8M|1|a|C|1752
*
8R8M|1|a|G|1756
8R8M|1|a|A|1757
8R8M|1|a|U|1758
8R8M|1|a|A|1759
8R8M|1|a|C|1760
8R8M|1|a|C|1761
8R8M|1|a|A|1762
8R8M|1|a|G|1763
8R8M|1|a|C|1764
*
8R8M|1|a|G|1988
8R8M|1|a|G|1989
8R8M|1|a|C|1990

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain d
Large ribosomal subunit protein uL3
Chain j
Large ribosomal subunit protein uL14
Chain o
Large ribosomal subunit protein bL19

Coloring options:


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