J5_8RCM_004

3D structure

PDB id

8RCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8RCM|1|72|U|1758, 8RCM|1|72|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8RCM_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0819

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8RCM|1|72|G|1674
8RCM|1|72|C|1675
8RCM|1|72|A|1676
8RCM|1|72|A|1677
8RCM|1|72|A|1678
8RCM|1|72|A|1679
8RCM|1|72|U|1680
8RCM|1|72|G|1681
8RCM|1|72|G|1682
*
8RCM|1|72|C|1706
8RCM|1|72|G|1707
*
8RCM|1|72|U|1751
8RCM|1|72|C|1752
*
8RCM|1|72|G|1756
8RCM|1|72|A|1757
8RCM|1|72|U|1758
8RCM|1|72|A|1759
8RCM|1|72|C|1760
8RCM|1|72|C|1761
8RCM|1|72|A|1762
8RCM|1|72|G|1763
8RCM|1|72|C|1764
*
8RCM|1|72|G|1988
8RCM|1|72|G|1989
8RCM|1|72|C|1990

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA