J5_8RCT_004

3D structure

PDB id

8RCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.32 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8RCT|1|72|U|1758, 8RCT|1|72|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8RCT_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0792

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8RCT|1|72|G|1674
8RCT|1|72|C|1675
8RCT|1|72|A|1676
8RCT|1|72|A|1677
8RCT|1|72|A|1678
8RCT|1|72|A|1679
8RCT|1|72|U|1680
8RCT|1|72|G|1681
8RCT|1|72|G|1682
*
8RCT|1|72|C|1706
8RCT|1|72|G|1707
*
8RCT|1|72|U|1751
8RCT|1|72|C|1752
*
8RCT|1|72|G|1756
8RCT|1|72|A|1757
8RCT|1|72|U|1758
8RCT|1|72|A|1759
8RCT|1|72|C|1760
8RCT|1|72|C|1761
8RCT|1|72|A|1762
8RCT|1|72|G|1763
8RCT|1|72|C|1764
*
8RCT|1|72|G|1988
8RCT|1|72|G|1989
8RCT|1|72|C|1990

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA