J5_8RD8_002
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CG*CG
- Length
- 15 nucleotides
- Bulged bases
- 8RD8|1|Z2|A|515, 8RD8|1|Z2|U|547
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8RD8_002 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.0487
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8RD8|1|Z2|C|514
8RD8|1|Z2|A|515
8RD8|1|Z2|G|516
*
8RD8|1|Z2|C|545
8RD8|1|Z2|G|546
8RD8|1|Z2|U|547
8RD8|1|Z2|A|548
8RD8|1|Z2|C|549
*
8RD8|1|Z2|G|562
8RD8|1|Z2|G|563
8RD8|1|Z2|G|564
*
8RD8|1|Z2|C|1245
8RD8|1|Z2|G|1246
*
8RD8|1|Z2|C|2003
8RD8|1|Z2|G|2004
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain E9
- Large ribosomal subunit protein uL4
- Chain PO
- Large ribosomal subunit protein bL20
- Chain Qb
- Large ribosomal subunit protein bL21
- Chain RF
- Large ribosomal subunit protein uL22
- Chain aA
- Large ribosomal subunit protein bL32
Coloring options: