J5_8RD8_004
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGG*CGC
- Length
- 25 nucleotides
- Bulged bases
- 8RD8|1|Z2|U|1744, 8RD8|1|Z2|G|1749
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8RD8_004 not in the Motif Atlas
- Homologous match to J5_5J7L_016
- Geometric discrepancy: 0.0425
- The information below is about J5_5J7L_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8RD8|1|Z2|G|1662
8RD8|1|Z2|C|1663
8RD8|1|Z2|A|1664
8RD8|1|Z2|A|1665
8RD8|1|Z2|A|1666
8RD8|1|Z2|A|1667
8RD8|1|Z2|U|1668
8RD8|1|Z2|G|1669
8RD8|1|Z2|G|1670
*
8RD8|1|Z2|C|1694
8RD8|1|Z2|G|1695
*
8RD8|1|Z2|U|1737
8RD8|1|Z2|C|1738
*
8RD8|1|Z2|G|1742
8RD8|1|Z2|A|1743
8RD8|1|Z2|U|1744
8RD8|1|Z2|A|1745
8RD8|1|Z2|C|1746
8RD8|1|Z2|C|1747
8RD8|1|Z2|A|1748
8RD8|1|Z2|G|1749
8RD8|1|Z2|G|1750
*
8RD8|1|Z2|C|1974
8RD8|1|Z2|G|1975
8RD8|1|Z2|C|1976
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Af
- Large ribosomal subunit protein uL3
- Chain Je
- Large ribosomal subunit protein uL14
- Chain Oi
- Large ribosomal subunit protein bL19
- Chain iN
- Small subunit ribosomal RNA; SSU rRNA
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