J5_8RDV_001
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAUGAAA*UGAAUG*CA*UAU*AAG
- Length
- 22 nucleotides
- Bulged bases
- 8RDV|1|Z2|U|57
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8RDV_001 not in the Motif Atlas
- Homologous match to J5_5J7L_013
- Geometric discrepancy: 0.0508
- The information below is about J5_5J7L_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8RDV|1|Z2|C|54
8RDV|1|Z2|G|55
8RDV|1|Z2|A|56
8RDV|1|Z2|U|57
8RDV|1|Z2|G|58
8RDV|1|Z2|A|59
8RDV|1|Z2|A|60
8RDV|1|Z2|A|61
*
8RDV|1|Z2|U|122
8RDV|1|Z2|G|123
8RDV|1|Z2|A|124
8RDV|1|Z2|A|125
8RDV|1|Z2|U|126
8RDV|1|Z2|G|127
*
8RDV|1|Z2|C|136
8RDV|1|Z2|A|137
*
8RDV|1|Z2|U|154
8RDV|1|Z2|A|155
8RDV|1|Z2|U|156
*
8RDV|1|Z2|A|173
8RDV|1|Z2|A|174
8RDV|1|Z2|G|175
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Ba
- Large ribosomal subunit protein bL34
- Chain Sn
- Large ribosomal subunit protein uL23
Coloring options: