J5_8RDV_007

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGG*CGUG*CUUUA*UAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8RDV_007 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.0682

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

8RDV|1|iN|C|83
8RDV|1|iN|U|84
8RDV|1|iN|G|85
8RDV|1|iN|G|86
*
8RDV|1|iN|C|446
8RDV|1|iN|G|447
8RDV|1|iN|U|448
8RDV|1|iN|G|449
*
8RDV|1|iN|C|479
8RDV|1|iN|U|480
8RDV|1|iN|U|481
8RDV|1|iN|U|482
8RDV|1|iN|A|483
*
8RDV|1|iN|U|540
8RDV|1|iN|A|541
8RDV|1|iN|A|542
8RDV|1|iN|G|543
*
8RDV|1|iN|C|588
8RDV|1|iN|A|589
8RDV|1|iN|A|590
8RDV|1|iN|G|591

Current chains

Chain iN

16S rRNA

Nearby chains

Chain Dm

Small ribosomal subunit protein uS4

Chain L6

Small ribosomal subunit protein uS12