J5_8RDW_006
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 8RDW|1|Z2|U|2062, 8RDW|1|Z2|G|2411, 8RDW|1|Z2|G|2412, 8RDW|1|Z2|A|2413, 8RDW|1|Z2|U|2414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8RDW_006 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.0719
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8RDW|1|Z2|U|2060
8RDW|1|Z2|U|2061
8RDW|1|Z2|U|2062
8RDW|1|Z2|A|2063
*
8RDW|1|Z2|U|2226
8RDW|1|Z2|U|2227
8RDW|1|Z2|U|2228
8RDW|1|Z2|G|2229
*
8RDW|1|Z2|C|2241
8RDW|1|Z2|U|2242
*
8RDW|1|Z2|A|2264
8RDW|1|Z2|G|2265
*
8RDW|1|Z2|C|2410
8RDW|1|Z2|G|2411
8RDW|1|Z2|G|2412
8RDW|1|Z2|A|2413
8RDW|1|Z2|U|2414
8RDW|1|Z2|A|2415
8RDW|1|Z2|A|2416
8RDW|1|Z2|A|2417
8RDW|1|Z2|A|2418
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Cl
- Large ribosomal subunit protein uL2
- Chain Kd
- Large ribosomal subunit protein uL15
- Chain VH
- Large ribosomal subunit protein bL27
- Chain WD
- Large ribosomal subunit protein bL28
- Chain dh
- Large ribosomal subunit protein bL35
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