3D structure

PDB id
8RJC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.90061 Å

Loop

Sequence
GCAAGCCGG*UG*UG*CGGACCAGG*CAC
Length
25 nucleotides
Bulged bases
8RJC|1|K|G|3620, 8RJC|1|K|G|3625
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8RJC_003 not in the Motif Atlas
Homologous match to J5_8C3A_004
Geometric discrepancy: 0.1087
The information below is about J5_8C3A_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8RJC|1|K|G|2855
8RJC|1|K|C|2856
8RJC|1|K|A|2857
8RJC|1|K|A|2858
8RJC|1|K|G|2859
8RJC|1|K|C|2860
8RJC|1|K|C|2861
8RJC|1|K|G|2862
8RJC|1|K|G|2863
*
8RJC|1|K|U|2887
8RJC|1|K|G|2888
*
8RJC|1|K|U|3613
8RJC|1|K|G|3614
*
8RJC|1|K|C|3618
8RJC|1|K|G|3619
8RJC|1|K|G|3620
8RJC|1|K|A|3621
8RJC|1|K|C|3622
8RJC|1|K|C|3623
8RJC|1|K|A|3624
8RJC|1|K|G|3625
8RJC|1|K|G|3626
*
8RJC|1|K|C|3835
8RJC|1|K|A|3836
8RJC|1|K|C|3837

Current chains

Chain K
28S rRNA

Nearby chains

Chain R
Ribosomal protein L19
Chain V
Ribosomal protein L23
Chain W
Ribosomal protein L24
Chain w
Ribosomal protein L3

Coloring options:


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