J5_8RJC_004
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8RJC|1|K|A|4394, 8RJC|1|K|U|4450, 8RJC|1|K|U|4555, 8RJC|1|K|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RJC|1|K|A|3903
8RJC|1|K|G|3904
8RJC|1|K|A|3905
8RJC|1|K|A|3906
8RJC|1|K|G|3907
8RJC|1|K|A|3908
8RJC|1|K|C|3909
8RJC|1|K|C|3910
*
8RJC|1|K|G|4392
8RJC|1|K|G|4393
8RJC|1|K|A|4394
8RJC|1|K|U|4395
8RJC|1|K|A|4396
8RJC|1|K|A|4397
8RJC|1|K|C|4398
8RJC|1|K|U|4399
8RJC|1|K|G|4400
*
8RJC|1|K|C|4444
8RJC|1|K|U|4445
8RJC|1|K|U|4446
8RJC|1|K|C|4447
8RJC|1|K|G|4448
8RJC|1|K|A|4449
8RJC|1|K|U|4450
8RJC|1|K|G|4451
8RJC|1|K|U|4452
8RJC|1|K|C|4453
*
8RJC|1|K|G|4528
8RJC|1|K|G|4529
8RJC|1|K|U|4530
8RJC|1|K|U|4531
8RJC|1|K|U|4532
8RJC|1|K|A|4533
8RJC|1|K|G|4534
*
8RJC|1|K|U|4552
8RJC|1|K|A|4553
8RJC|1|K|G|4554
8RJC|1|K|U|4555
8RJC|1|K|U|4556
8RJC|1|K|U|4557
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain B
- Nascent chain
- Chain C
- Large ribosomal subunit protein uL4
- Chain a
- 60S ribosomal protein L27a
- Chain b
- 60S ribosomal protein L29
- Chain q
- Transfer RNA; tRNA
- Chain w
- Ribosomal protein L3
Coloring options: