J5_8RJC_005
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 8RJC|1|K|G|3922, 8RJC|1|K|A|4376, 8RJC|1|K|G|4377, 8RJC|1|K|A|4378, 8RJC|1|K|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8RJC_005 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.2996
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08912.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8RJC|1|K|U|3920
8RJC|1|K|U|3921
8RJC|1|K|G|3922
8RJC|1|K|A|3923
*
8RJC|1|K|U|4188
8RJC|1|K|U|4189
8RJC|1|K|U|4190
8RJC|1|K|G|4191
*
8RJC|1|K|C|4204
8RJC|1|K|A|4205
*
8RJC|1|K|U|4227
8RJC|1|K|G|4228
*
8RJC|1|K|C|4375
8RJC|1|K|A|4376
8RJC|1|K|G|4377
8RJC|1|K|A|4378
8RJC|1|K|A|4379
8RJC|1|K|A|4380
8RJC|1|K|A|4381
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain N
- Ribosomal protein L15
- Chain Q
- Ribosomal protein L18
- Chain T
- 60S ribosomal protein L21
- Chain a
- 60S ribosomal protein L27a
- Chain b
- 60S ribosomal protein L29
- Chain o
- 60S ribosomal protein L36a-like
- Chain q
- Transfer RNA; tRNA
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