J5_8RPY_004

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8RPY|1|A|U|1758, 8RPY|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8RPY_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0792

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8RPY|1|A|G|1674
8RPY|1|A|C|1675
8RPY|1|A|A|1676
8RPY|1|A|A|1677
8RPY|1|A|A|1678
8RPY|1|A|A|1679
8RPY|1|A|U|1680
8RPY|1|A|G|1681
8RPY|1|A|G|1682
*
8RPY|1|A|C|1706
8RPY|1|A|G|1707
*
8RPY|1|A|U|1751
8RPY|1|A|C|1752
*
8RPY|1|A|G|1756
8RPY|1|A|A|1757
8RPY|1|A|U|1758
8RPY|1|A|A|1759
8RPY|1|A|C|1760
8RPY|1|A|C|1761
8RPY|1|A|A|1762
8RPY|1|A|G|1763
8RPY|1|A|C|1764
*
8RPY|1|A|G|1988
8RPY|1|A|G|1989
8RPY|1|A|C|1990

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain K

Large ribosomal subunit protein uL14

Chain P

Large ribosomal subunit protein bL19