J5_8RQ0_004

3D structure

PDB id

8RQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8RQ0|1|A|U|1758, 8RQ0|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8RQ0_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0707

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8RQ0|1|A|G|1674
8RQ0|1|A|C|1675
8RQ0|1|A|A|1676
8RQ0|1|A|A|1677
8RQ0|1|A|A|1678
8RQ0|1|A|A|1679
8RQ0|1|A|U|1680
8RQ0|1|A|G|1681
8RQ0|1|A|G|1682
*
8RQ0|1|A|C|1706
8RQ0|1|A|G|1707
*
8RQ0|1|A|U|1751
8RQ0|1|A|C|1752
*
8RQ0|1|A|G|1756
8RQ0|1|A|A|1757
8RQ0|1|A|U|1758
8RQ0|1|A|A|1759
8RQ0|1|A|C|1760
8RQ0|1|A|C|1761
8RQ0|1|A|A|1762
8RQ0|1|A|G|1763
8RQ0|1|A|C|1764
*
8RQ0|1|A|G|1988
8RQ0|1|A|G|1989
8RQ0|1|A|C|1990

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain K

Large ribosomal subunit protein uL14

Chain P

Large ribosomal subunit protein bL19