3D structure

PDB id
8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III
Experimental method
ELECTRON MICROSCOPY
Resolution
2.44 Å

Loop

Sequence
CAG*CGUAC*GGG*CA*UG
Length
15 nucleotides
Bulged bases
8RQ2|1|A|A|532, 8RQ2|1|A|U|562
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8RQ2_002 not in the Motif Atlas
Homologous match to J5_5J7L_014
Geometric discrepancy: 0.0602
The information below is about J5_5J7L_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_43153.5
Basepair signature
cWW-cWW-cWW-F-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

8RQ2|1|A|C|531
8RQ2|1|A|A|532
8RQ2|1|A|G|533
*
8RQ2|1|A|C|560
8RQ2|1|A|G|561
8RQ2|1|A|U|562
8RQ2|1|A|A|563
8RQ2|1|A|C|564
*
8RQ2|1|A|G|577
8RQ2|1|A|G|578
8RQ2|1|A|G|579
*
8RQ2|1|A|C|1261
8RQ2|1|A|A|1262
*
8RQ2|1|A|U|2017
8RQ2|1|A|G|2018

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 0
Large ribosomal subunit protein bL32
Chain E
Large ribosomal subunit protein uL4
Chain Q
Large ribosomal subunit protein bL20
Chain R
Large ribosomal subunit protein bL21
Chain S
Large ribosomal subunit protein uL22

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1981 s