J5_8RQ2_004

3D structure

PDB id

8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8RQ2|1|A|U|1758, 8RQ2|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8RQ2_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0707

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8RQ2|1|A|G|1674
8RQ2|1|A|C|1675
8RQ2|1|A|A|1676
8RQ2|1|A|A|1677
8RQ2|1|A|A|1678
8RQ2|1|A|A|1679
8RQ2|1|A|U|1680
8RQ2|1|A|G|1681
8RQ2|1|A|G|1682
*
8RQ2|1|A|C|1706
8RQ2|1|A|G|1707
*
8RQ2|1|A|U|1751
8RQ2|1|A|C|1752
*
8RQ2|1|A|G|1756
8RQ2|1|A|A|1757
8RQ2|1|A|U|1758
8RQ2|1|A|A|1759
8RQ2|1|A|C|1760
8RQ2|1|A|C|1761
8RQ2|1|A|A|1762
8RQ2|1|A|G|1763
8RQ2|1|A|C|1764
*
8RQ2|1|A|G|1988
8RQ2|1|A|G|1989
8RQ2|1|A|C|1990

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain K

Large ribosomal subunit protein uL14

Chain P

Large ribosomal subunit protein bL19