J5_8RXH_003
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- AG(A2M)AGACC*(OMG)GAUAACUGG*(PSU)CCUU(5MC)GAUGUC*GGUUUAG*(PSU)GGUUU
- Length
- 43 nucleotides
- Bulged bases
- 8RXH|1|L2|A|650, 8RXH|1|L2|A|1255, 8RXH|1|L2|U|1256, 8RXH|1|L2|U|1311, 8RXH|1|L2|G|1312, 8RXH|1|L2|U|1416, 8RXH|1|L2|U|1417
- QA status
- Modified nucleotides: A2M, OMG, PSU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RXH|1|L2|A|645
8RXH|1|L2|G|646
8RXH|1|L2|A2M|647
8RXH|1|L2|A|648
8RXH|1|L2|G|649
8RXH|1|L2|A|650
8RXH|1|L2|C|651
8RXH|1|L2|C|652
*
8RXH|1|L2|OMG|1253
8RXH|1|L2|G|1254
8RXH|1|L2|A|1255
8RXH|1|L2|U|1256
8RXH|1|L2|A|1257
8RXH|1|L2|A|1258
8RXH|1|L2|C|1259
8RXH|1|L2|U|1260
8RXH|1|L2|G|1261
8RXH|1|L2|G|1262
*
8RXH|1|L2|PSU|1303
8RXH|1|L2|C|1304
8RXH|1|L2|C|1305
8RXH|1|L2|U|1306
8RXH|1|L2|U|1307
8RXH|1|L2|5MC|1308
8RXH|1|L2|G|1309
8RXH|1|L2|A|1310
8RXH|1|L2|U|1311
8RXH|1|L2|G|1312
8RXH|1|L2|U|1313
8RXH|1|L2|C|1314
*
8RXH|1|L2|G|1389
8RXH|1|L2|G|1390
8RXH|1|L2|U|1391
8RXH|1|L2|U|1392
8RXH|1|L2|U|1393
8RXH|1|L2|A|1394
8RXH|1|L2|G|1395
*
8RXH|1|L2|PSU|1413
8RXH|1|L2|G|1414
8RXH|1|L2|G|1415
8RXH|1|L2|U|1416
8RXH|1|L2|U|1417
8RXH|1|L2|U|1418
Current chains
- Chain L2
- LSUb_rRNA_chain_2
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LA
- Putative 60S ribosomal protein L2
- Chain LB
- Putative ribosomal protein L3
- Chain LC
- Putative ribosomal protein L1a
- Chain LL
- Putative 60S ribosomal protein L27A/L29
- Chain LN
- Putative 60S ribosomal protein L10
- Chain LT
- Putative 60S ribosomal protein L17
- Chain Lb
- 60S ribosomal protein L29
- Chain S2
- Transfer RNA; tRNA
- Chain S3
- Transfer RNA; tRNA
Coloring options: