J5_8RXH_004
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- (PSU)UG(A2M)*UUUG*UA*(OMU)(OMG)*CAGAAUA
- Length
- 19 nucleotides
- Bulged bases
- 8RXH|1|L2|G|664, 8RXH|1|L2|A|1237, 8RXH|1|L2|G|1238, 8RXH|1|L2|A|1239, 8RXH|1|L2|A|1240, 8RXH|1|L2|U|1241
- QA status
- Modified nucleotides: PSU, A2M, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8RXH_004 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.328
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8RXH|1|L2|PSU|662
8RXH|1|L2|U|663
8RXH|1|L2|G|664
8RXH|1|L2|A2M|665
*
8RXH|1|L2|U|1038
8RXH|1|L2|U|1039
8RXH|1|L2|U|1040
8RXH|1|L2|G|1041
*
8RXH|1|L2|U|1054
8RXH|1|L2|A|1055
*
8RXH|1|L2|OMU|1077
8RXH|1|L2|OMG|1078
*
8RXH|1|L2|C|1236
8RXH|1|L2|A|1237
8RXH|1|L2|G|1238
8RXH|1|L2|A|1239
8RXH|1|L2|A|1240
8RXH|1|L2|U|1241
8RXH|1|L2|A|1242
Current chains
- Chain L2
- LSUb_rRNA_chain_2
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LA
- Putative 60S ribosomal protein L2
- Chain LL
- Putative 60S ribosomal protein L27A/L29
- Chain LM
- Ribosomal protein L15
- Chain LP
- 60S ribosomal protein L18
- Chain Lb
- 60S ribosomal protein L29
- Chain Lp
- Putative 60S ribosomal protein L44
- Chain S4
- Transfer RNA; tRNA
Coloring options: