J5_8RXH_007

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CU(PSU)GU*AAAUAG*CAAUGGG*CGAGUAACAAU*AAAG

Length

33 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RXH|1|S1|C|31
8RXH|1|S1|U|32
8RXH|1|S1|PSU|33
8RXH|1|S1|G|34
8RXH|1|S1|U|35
*
8RXH|1|S1|A|521
8RXH|1|S1|A|522
8RXH|1|S1|A|523
8RXH|1|S1|U|524
8RXH|1|S1|A|525
8RXH|1|S1|G|526
*
8RXH|1|S1|C|555
8RXH|1|S1|A|556
8RXH|1|S1|A|557
8RXH|1|S1|U|558
8RXH|1|S1|G|559
8RXH|1|S1|G|560
8RXH|1|S1|G|561
*
8RXH|1|S1|C|585
8RXH|1|S1|G|586
8RXH|1|S1|A|587
8RXH|1|S1|G|588
8RXH|1|S1|U|589
8RXH|1|S1|A|590
8RXH|1|S1|A|591
8RXH|1|S1|C|592
8RXH|1|S1|A|593
8RXH|1|S1|A|594
8RXH|1|S1|U|595
*
8RXH|1|S1|A|641
8RXH|1|S1|A|642
8RXH|1|S1|A|643
8RXH|1|S1|G|644

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SD

Putative 40S ribosomal protein S9

Chain SP

Putative 40S ribosomal protein S23

Chain Se

40S ribosomal protein S30