J5_8SCB_005
3D structure
- PDB id
- 8SCB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Terminating ribosome with SRI-41315
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*(OMU)(OMG)*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 8SCB|1|5|G|3922, 8SCB|1|5|A|4376, 8SCB|1|5|G|4377, 8SCB|1|5|A|4378, 8SCB|1|5|A|4379
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8SCB_005 not in the Motif Atlas
- Homologous match to J5_8C3A_006
- Geometric discrepancy: 0.3322
- The information below is about J5_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8SCB|1|5|PSU|3920
8SCB|1|5|U|3921
8SCB|1|5|G|3922
8SCB|1|5|A|3923
*
8SCB|1|5|U|4188
8SCB|1|5|U|4189
8SCB|1|5|U|4190
8SCB|1|5|G|4191
*
8SCB|1|5|C|4204
8SCB|1|5|A|4205
*
8SCB|1|5|OMU|4227
8SCB|1|5|OMG|4228
*
8SCB|1|5|C|4375
8SCB|1|5|A|4376
8SCB|1|5|G|4377
8SCB|1|5|A|4378
8SCB|1|5|A|4379
8SCB|1|5|A|4380
8SCB|1|5|A|4381
Current chains
- Chain 5
- 28S_rRNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain 3
- Transfer RNA; tRNA
- Chain A
- Ribosomal protein L8
- Chain N
- Ribosomal protein L15
- Chain Q
- Ribosomal protein L18
- Chain T
- eL21
- Chain a
- 60S ribosomal protein L27a
- Chain b
- 60S ribosomal protein L29
- Chain o
- eL42
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