J5_8T2X_003

3D structure

PDB id

8T2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG

Length

27 nucleotides

Bulged bases

8T2X|1|A1|U|719, 8T2X|1|A1|A|784, 8T2X|1|A1|G|785

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8T2X_003 not in the Motif Atlas

Homologous match to J5_8P9A_012

Geometric discrepancy: 0.0528

The information below is about J5_8P9A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_23272.1

Basepair signature

cWW-F-F-F-F-cWW-cWW-F-F-F-cWW-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8T2X|1|A1|C|675
8T2X|1|A1|G|676
8T2X|1|A1|A|677
8T2X|1|A1|G|678
*
8T2X|1|A1|C|702
8T2X|1|A1|G|703
8T2X|1|A1|U|704
8T2X|1|A1|A|705
8T2X|1|A1|A|706
*
8T2X|1|A1|U|713
8T2X|1|A1|G|714
8T2X|1|A1|A|715
8T2X|1|A1|A|716
8T2X|1|A1|C|717
8T2X|1|A1|G|718
8T2X|1|A1|U|719
8T2X|1|A1|A|720
8T2X|1|A1|G|721
*
8T2X|1|A1|C|749
8T2X|1|A1|G|750
8T2X|1|A1|A|751
*
8T2X|1|A1|U|782
8T2X|1|A1|A|783
8T2X|1|A1|A|784
8T2X|1|A1|G|785
8T2X|1|A1|A|786
8T2X|1|A1|G|787

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AC

RPL4A isoform 1

Chain AL

60S ribosomal protein L13-A

Chain AQ

60S ribosomal protein L18-A

Chain Aa

60S ribosomal protein L28

Chain Ab

RPL29 isoform 1

Chain Ai

60S ribosomal protein L36-A