Loop J5_8T3B

3D structure

PDB id: 8T3B (explore in PDB, NAKB, or RNA 3D Hub)
Description: Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å

Loop

Sequence: GAUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UGUA*UUUUCGA*UGGUUC
Length: 49 nucleotides
Bulged bases: 8T3B|1|B5|U|134, 8T3B|1|B5|A|135, 8T3B|1|B5|C|136, 8T3B|1|B5|U|137, 8T3B|1|B5|A|140, 8T3B|1|B5|U|141, 8T3B|1|B5|U|178, 8T3B|1|B5|U|260
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8T3B|1|B5|G|123
8T3B|1|B5|A|124
8T3B|1|B5|U|125
8T3B|1|B5|A|126
8T3B|1|B5|G|127
8T3B|1|B5|U|128
8T3B|1|B5|U|129
8T3B|1|B5|C|130
8T3B|1|B5|C|131
8T3B|1|B5|U|132
8T3B|1|B5|U|133
8T3B|1|B5|U|134
8T3B|1|B5|A|135
8T3B|1|B5|C|136
8T3B|1|B5|U|137
8T3B|1|B5|A|138
8T3B|1|B5|C|139
8T3B|1|B5|A|140
8T3B|1|B5|U|141
8T3B|1|B5|G|142
8T3B|1|B5|G|143
*
8T3B|1|B5|C|172
8T3B|1|B5|A|173
8T3B|1|B5|U|174
8T3B|1|B5|G|175
8T3B|1|B5|C|176
8T3B|1|B5|U|177
8T3B|1|B5|U|178
8T3B|1|B5|A|179
8T3B|1|B5|A|180
8T3B|1|B5|A|181
8T3B|1|B5|A|182
*
8T3B|1|B5|U|203
8T3B|1|B5|G|204
8T3B|1|B5|U|205
8T3B|1|B5|A|206
*
8T3B|1|B5|U|259
8T3B|1|B5|U|260
8T3B|1|B5|U|261
8T3B|1|B5|U|262
8T3B|1|B5|C|263
8T3B|1|B5|G|264
8T3B|1|B5|A|265
*
8T3B|1|B5|U|289
8T3B|1|B5|G|290
8T3B|1|B5|G|291
8T3B|1|B5|U|292
8T3B|1|B5|U|293
8T3B|1|B5|C|294

Current chains

Chain B5: 18S rRNA

Nearby chains

Chain BE: 40S ribosomal protein S4-A
Chain BG: 40S ribosomal protein S6-A
Chain BI: 40S ribosomal protein S8-A

J5_8T3B_010