J5_8T3C_004
3D structure
- PDB id
- 8T3C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8T3C|1|A1|G|2116, 8T3C|1|A1|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8T3C_004 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.142
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8T3C|1|A1|G|1906
8T3C|1|A1|C|1907
8T3C|1|A1|A|1908
8T3C|1|A1|A|1909
8T3C|1|A1|A|1910
8T3C|1|A1|A|1911
8T3C|1|A1|U|1912
8T3C|1|A1|A|1913
8T3C|1|A1|G|1914
*
8T3C|1|A1|U|1938
8T3C|1|A1|G|1939
*
8T3C|1|A1|U|2109
8T3C|1|A1|G|2110
*
8T3C|1|A1|C|2114
8T3C|1|A1|G|2115
8T3C|1|A1|G|2116
8T3C|1|A1|A|2117
8T3C|1|A1|C|2118
8T3C|1|A1|A|2119
8T3C|1|A1|A|2120
8T3C|1|A1|G|2121
8T3C|1|A1|G|2122
*
8T3C|1|A1|C|2331
8T3C|1|A1|A|2332
8T3C|1|A1|C|2333
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L3
- Chain AR
- 60S ribosomal protein L19-A
- Chain AV
- 60S ribosomal protein L23-A
- Chain AW
- RPL24A isoform 1
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: