J5_8T3C_008

3D structure

PDB id

8T3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3C|1|B5|C|31
8T3C|1|B5|U|32
8T3C|1|B5|U|33
8T3C|1|B5|G|34
8T3C|1|B5|U|35
*
8T3C|1|B5|A|473
8T3C|1|B5|A|474
8T3C|1|B5|A|475
8T3C|1|B5|U|476
8T3C|1|B5|A|477
8T3C|1|B5|A|478
8T3C|1|B5|C|479
*
8T3C|1|B5|G|509
8T3C|1|B5|G|510
8T3C|1|B5|A|511
8T3C|1|B5|A|512
8T3C|1|B5|U|513
8T3C|1|B5|G|514
8T3C|1|B5|A|515
8T3C|1|B5|G|516
*
8T3C|1|B5|C|536
8T3C|1|B5|G|537
8T3C|1|B5|A|538
8T3C|1|B5|G|539
8T3C|1|B5|G|540
8T3C|1|B5|A|541
8T3C|1|B5|A|542
8T3C|1|B5|C|543
8T3C|1|B5|A|544
8T3C|1|B5|A|545
8T3C|1|B5|U|546
*
8T3C|1|B5|A|592
8T3C|1|B5|U|593
8T3C|1|B5|A|594
8T3C|1|B5|G|595

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BX

40S ribosomal protein S23-A

Chain Be

40S ribosomal protein S30-A