J5_8T5D_009
3D structure
- PDB id
- 8T5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8T5D|1|v|A|109, 8T5D|1|v|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8T5D_009 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.0823
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8T5D|1|v|C|58
8T5D|1|v|A|59
8T5D|1|v|A|60
8T5D|1|v|G|61
*
8T5D|1|v|C|106
8T5D|1|v|G|107
8T5D|1|v|G|108
8T5D|1|v|A|109
8T5D|1|v|C|110
8T5D|1|v|G|111
8T5D|1|v|G|112
8T5D|1|v|G|113
*
8T5D|1|v|C|314
8T5D|1|v|A|315
8T5D|1|v|C|316
*
8T5D|1|v|G|337
8T5D|1|v|A|338
8T5D|1|v|C|339
*
8T5D|1|v|G|350
8T5D|1|v|G|351
8T5D|1|v|C|352
8T5D|1|v|A|353
8T5D|1|v|G|354
Current chains
- Chain v
- 16s RNA
Nearby chains
- Chain K
- 50S ribosomal protein L14
- Chain P
- 50S ribosomal protein L19
- Chain o
- 30S ribosomal protein S16
- Chain s
- 30S ribosomal protein S20
Coloring options: