3D structure

PDB id
8T5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CGAUGAAG*CGAAUG*CA*UAU*AGG
Length
22 nucleotides
Bulged bases
8T5H|1|B|U|50
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8T5H_001 not in the Motif Atlas
Homologous match to J5_5J7L_013
Geometric discrepancy: 0.0835
The information below is about J5_5J7L_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_01737.2
Basepair signature
cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

8T5H|1|B|C|47
8T5H|1|B|G|48
8T5H|1|B|A|49
8T5H|1|B|U|50
8T5H|1|B|G|51
8T5H|1|B|A|52
8T5H|1|B|A|53
8T5H|1|B|G|54
*
8T5H|1|B|C|116
8T5H|1|B|G|117
8T5H|1|B|A|118
8T5H|1|B|A|119
8T5H|1|B|U|120
8T5H|1|B|G|121
*
8T5H|1|B|C|130
8T5H|1|B|A|131
*
8T5H|1|B|U|148
8T5H|1|B|A|149
8T5H|1|B|U|150
*
8T5H|1|B|A|176
8T5H|1|B|G|177
8T5H|1|B|G|178

Current chains

Chain B
23S

Nearby chains

Chain 2
50S ribosomal protein L34

Coloring options:


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