3D structure

PDB id
8T5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CAAG*CGGACGGG*CAC*GAC*GGCAG
Length
23 nucleotides
Bulged bases
8T5H|1|v|A|109, 8T5H|1|v|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8T5H_009 not in the Motif Atlas
Homologous match to J5_5J7L_003
Geometric discrepancy: 0.0924
The information below is about J5_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

8T5H|1|v|C|58
8T5H|1|v|A|59
8T5H|1|v|A|60
8T5H|1|v|G|61
*
8T5H|1|v|C|106
8T5H|1|v|G|107
8T5H|1|v|G|108
8T5H|1|v|A|109
8T5H|1|v|C|110
8T5H|1|v|G|111
8T5H|1|v|G|112
8T5H|1|v|G|113
*
8T5H|1|v|C|314
8T5H|1|v|A|315
8T5H|1|v|C|316
*
8T5H|1|v|G|337
8T5H|1|v|A|338
8T5H|1|v|C|339
*
8T5H|1|v|G|350
8T5H|1|v|G|351
8T5H|1|v|C|352
8T5H|1|v|A|353
8T5H|1|v|G|354

Current chains

Chain v
16S

Nearby chains

Chain K
50S ribosomal protein L14
Chain P
50S ribosomal protein L19
Chain o
30S ribosomal protein S16
Chain s
30S ribosomal protein S20

Coloring options:


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