J5_8T8B_018

3D structure

PDB id

8T8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MAI-tripeptidyl-tRNA analog ACCA-IAMf at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8T8B_018 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0893

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

8T8B|1|2a|C|36
8T8B|1|2a|U|37
8T8B|1|2a|G|38
8T8B|1|2a|G|39
*
8T8B|1|2a|C|403
8T8B|1|2a|U|404
8T8B|1|2a|U|405
8T8B|1|2a|G|406
*
8T8B|1|2a|C|436
8T8B|1|2a|U|437
8T8B|1|2a|G|438
8T8B|1|2a|A|439
8T8B|1|2a|A|441
8T8B|1|2a|C|442
*
8T8B|1|2a|G|492
8T8B|1|2a|G|493
8T8B|1|2a|U|494
8T8B|1|2a|A|495
8T8B|1|2a|A|496
8T8B|1|2a|U|498
8T8B|1|2a|A|499
8T8B|1|2a|G|500
*
8T8B|1|2a|C|545
8T8B|1|2a|G|546
8T8B|1|2a|A|547
8T8B|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12