J5_8UIW_002

3D structure

PDB id

8UIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

yjdF riboswitch from R. gauvreauii in complex with chelerythrine bound to Fab BL3-6 S97N

Experimental method

X-RAY DIFFRACTION

Resolution

2.77 Å

Loop

Sequence

AUAAAAACACAACG*CAG*CA*UAAGUAACC*GUCCAUU

Length

35 nucleotides

Bulged bases

8UIW|1|R|U|96

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UIW|1|R|A|9
8UIW|1|R|U|10
8UIW|1|R|A|11
8UIW|1|R|A|12
8UIW|1|R|A|13
8UIW|1|R|A|14
8UIW|1|R|A|15
8UIW|1|R|C|16
8UIW|1|R|A|17
8UIW|1|R|C|18
8UIW|1|R|A|19
8UIW|1|R|A|20
8UIW|1|R|C|21
8UIW|1|R|G|22
*
8UIW|1|R|C|42
8UIW|1|R|A|43
8UIW|1|R|G|44
*
8UIW|1|R|C|64
8UIW|1|R|A|65
*
8UIW|1|R|U|92
8UIW|1|R|A|93
8UIW|1|R|A|94
8UIW|1|R|G|95
8UIW|1|R|U|96
8UIW|1|R|A|97
8UIW|1|R|A|98
8UIW|1|R|C|99
8UIW|1|R|C|100
*
8UIW|1|R|G|115
8UIW|1|R|U|116
8UIW|1|R|C|117
8UIW|1|R|C|118
8UIW|1|R|A|119
8UIW|1|R|U|120
8UIW|1|R|U|121

Current chains

Chain R

yjdF RNA (R. gauvreauii)

Nearby chains