J5_8UPO_002

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

8UPO|1|D|U|439

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8UPO_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0955

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

8UPO|1|D|C|36
8UPO|1|D|U|37
8UPO|1|D|G|38
8UPO|1|D|G|39
*
8UPO|1|D|C|403
8UPO|1|D|G|404
8UPO|1|D|U|405
8UPO|1|D|G|406
*
8UPO|1|D|C|436
8UPO|1|D|U|437
8UPO|1|D|U|438
8UPO|1|D|U|439
8UPO|1|D|C|440
8UPO|1|D|A|441
8UPO|1|D|G|442
*
8UPO|1|D|C|492
8UPO|1|D|A|493
8UPO|1|D|G|494
8UPO|1|D|A|495
8UPO|1|D|A|496
8UPO|1|D|G|497
8UPO|1|D|A|498
8UPO|1|D|A|499
8UPO|1|D|G|500
*
8UPO|1|D|C|545
8UPO|1|D|A|546
8UPO|1|D|A|547
8UPO|1|D|G|548

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12