J5_8UQL_007

3D structure

PDB id

8UQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8UQL|1|a|U|1758, 8UQL|1|a|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8UQL_007 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0591

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8UQL|1|a|G|1674
8UQL|1|a|C|1675
8UQL|1|a|A|1676
8UQL|1|a|A|1677
8UQL|1|a|A|1678
8UQL|1|a|A|1679
8UQL|1|a|U|1680
8UQL|1|a|G|1681
8UQL|1|a|G|1682
*
8UQL|1|a|C|1706
8UQL|1|a|G|1707
*
8UQL|1|a|U|1751
8UQL|1|a|C|1752
*
8UQL|1|a|G|1756
8UQL|1|a|A|1757
8UQL|1|a|U|1758
8UQL|1|a|A|1759
8UQL|1|a|C|1760
8UQL|1|a|C|1761
8UQL|1|a|A|1762
8UQL|1|a|G|1763
8UQL|1|a|C|1764
*
8UQL|1|a|G|1988
8UQL|1|a|G|1989
8UQL|1|a|C|1990

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14

Chain y

50S ribosomal protein L19