J5_8UQM_003

3D structure

PDB id

8UQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8UQM|1|D|A|109, 8UQM|1|D|C|352

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8UQM_003 not in the Motif Atlas

Homologous match to J5_5J7L_003

Geometric discrepancy: 0.0804

The information below is about J5_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8UQM|1|D|C|58
8UQM|1|D|A|59
8UQM|1|D|A|60
8UQM|1|D|G|61
*
8UQM|1|D|C|106
8UQM|1|D|G|107
8UQM|1|D|G|108
8UQM|1|D|A|109
8UQM|1|D|C|110
8UQM|1|D|G|111
8UQM|1|D|G|112
8UQM|1|D|G|113
*
8UQM|1|D|C|314
8UQM|1|D|A|315
8UQM|1|D|C|316
*
8UQM|1|D|G|337
8UQM|1|D|A|338
8UQM|1|D|C|339
*
8UQM|1|D|G|350
8UQM|1|D|G|351
8UQM|1|D|C|352
8UQM|1|D|A|353
8UQM|1|D|G|354

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20

Chain U

30S ribosomal protein S16

Chain t

50S ribosomal protein L14