J5_8UQM_004

3D structure

PDB id

8UQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8UQM|1|a|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8UQM_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0462

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8UQM|1|a|C|47
8UQM|1|a|G|48
8UQM|1|a|A|49
8UQM|1|a|U|50
8UQM|1|a|G|51
8UQM|1|a|A|52
8UQM|1|a|A|53
8UQM|1|a|G|54
*
8UQM|1|a|C|116
8UQM|1|a|G|117
8UQM|1|a|A|118
8UQM|1|a|A|119
8UQM|1|a|U|120
8UQM|1|a|G|121
*
8UQM|1|a|C|130
8UQM|1|a|A|131
*
8UQM|1|a|U|148
8UQM|1|a|A|149
8UQM|1|a|U|150
*
8UQM|1|a|A|176
8UQM|1|a|G|177
8UQM|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34