J5_8UQP_007

3D structure

PDB id

8UQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8UQP|1|a|U|1758, 8UQP|1|a|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8UQP_007 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0592

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8UQP|1|a|G|1674
8UQP|1|a|C|1675
8UQP|1|a|A|1676
8UQP|1|a|A|1677
8UQP|1|a|A|1678
8UQP|1|a|A|1679
8UQP|1|a|U|1680
8UQP|1|a|G|1681
8UQP|1|a|G|1682
*
8UQP|1|a|C|1706
8UQP|1|a|G|1707
*
8UQP|1|a|U|1751
8UQP|1|a|C|1752
*
8UQP|1|a|G|1756
8UQP|1|a|A|1757
8UQP|1|a|U|1758
8UQP|1|a|A|1759
8UQP|1|a|C|1760
8UQP|1|a|C|1761
8UQP|1|a|A|1762
8UQP|1|a|G|1763
8UQP|1|a|C|1764
*
8UQP|1|a|G|1988
8UQP|1|a|G|1989
8UQP|1|a|C|1990

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14

Chain y

50S ribosomal protein L19