J5_8UR0_004
3D structure
- PDB id
- 8UR0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CA*UAU*AGG
- Length
- 22 nucleotides
- Bulged bases
- 8UR0|1|a|U|50
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8UR0_004 not in the Motif Atlas
- Homologous match to J5_5J7L_013
- Geometric discrepancy: 0.0462
- The information below is about J5_5J7L_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8UR0|1|a|C|47
8UR0|1|a|G|48
8UR0|1|a|A|49
8UR0|1|a|U|50
8UR0|1|a|G|51
8UR0|1|a|A|52
8UR0|1|a|A|53
8UR0|1|a|G|54
*
8UR0|1|a|C|116
8UR0|1|a|G|117
8UR0|1|a|A|118
8UR0|1|a|A|119
8UR0|1|a|U|120
8UR0|1|a|G|121
*
8UR0|1|a|C|130
8UR0|1|a|A|131
*
8UR0|1|a|U|148
8UR0|1|a|A|149
8UR0|1|a|U|150
*
8UR0|1|a|A|176
8UR0|1|a|G|177
8UR0|1|a|G|178
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain m
- 50S ribosomal protein L34
Coloring options: