J5_8URI_003
3D structure
- PDB id
- 8URI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8URI|1|D|A|109, 8URI|1|D|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8URI_003 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.0804
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8URI|1|D|C|58
8URI|1|D|A|59
8URI|1|D|A|60
8URI|1|D|G|61
*
8URI|1|D|C|106
8URI|1|D|G|107
8URI|1|D|G|108
8URI|1|D|A|109
8URI|1|D|C|110
8URI|1|D|G|111
8URI|1|D|G|112
8URI|1|D|G|113
*
8URI|1|D|C|314
8URI|1|D|A|315
8URI|1|D|C|316
*
8URI|1|D|G|337
8URI|1|D|A|338
8URI|1|D|C|339
*
8URI|1|D|G|350
8URI|1|D|G|351
8URI|1|D|C|352
8URI|1|D|A|353
8URI|1|D|G|354
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain E
- 30S ribosomal protein S20
- Chain U
- 30S ribosomal protein S16
- Chain t
- 50S ribosomal protein L14
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