J5_8URI_004

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8URI|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8URI_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0463

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8URI|1|a|C|47
8URI|1|a|G|48
8URI|1|a|A|49
8URI|1|a|U|50
8URI|1|a|G|51
8URI|1|a|A|52
8URI|1|a|A|53
8URI|1|a|G|54
*
8URI|1|a|C|116
8URI|1|a|G|117
8URI|1|a|A|118
8URI|1|a|A|119
8URI|1|a|U|120
8URI|1|a|G|121
*
8URI|1|a|C|130
8URI|1|a|A|131
*
8URI|1|a|U|148
8URI|1|a|A|149
8URI|1|a|U|150
*
8URI|1|a|A|176
8URI|1|a|G|177
8URI|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34