J5_8URX_002

3D structure

PDB id

8URX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 30 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

8URX|1|D|U|439

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8URX_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0954

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

8URX|1|D|C|36
8URX|1|D|U|37
8URX|1|D|G|38
8URX|1|D|G|39
*
8URX|1|D|C|403
8URX|1|D|G|404
8URX|1|D|U|405
8URX|1|D|G|406
*
8URX|1|D|C|436
8URX|1|D|U|437
8URX|1|D|U|438
8URX|1|D|U|439
8URX|1|D|C|440
8URX|1|D|A|441
8URX|1|D|G|442
*
8URX|1|D|C|492
8URX|1|D|A|493
8URX|1|D|G|494
8URX|1|D|A|495
8URX|1|D|A|496
8URX|1|D|G|497
8URX|1|D|A|498
8URX|1|D|A|499
8URX|1|D|G|500
*
8URX|1|D|C|545
8URX|1|D|A|546
8URX|1|D|A|547
8URX|1|D|G|548

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12