J5_8URY_002
3D structure
- PDB id
- 8URY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 30 nt long spacer, and fMet-tRNA in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
- Length
- 28 nucleotides
- Bulged bases
- 8URY|1|D|U|439
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8URY_002 not in the Motif Atlas
- Homologous match to J5_5J7L_002
- Geometric discrepancy: 0.0955
- The information below is about J5_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_67416.1
- Basepair signature
- cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8URY|1|D|C|36
8URY|1|D|U|37
8URY|1|D|G|38
8URY|1|D|G|39
*
8URY|1|D|C|403
8URY|1|D|G|404
8URY|1|D|U|405
8URY|1|D|G|406
*
8URY|1|D|C|436
8URY|1|D|U|437
8URY|1|D|U|438
8URY|1|D|U|439
8URY|1|D|C|440
8URY|1|D|A|441
8URY|1|D|G|442
*
8URY|1|D|C|492
8URY|1|D|A|493
8URY|1|D|G|494
8URY|1|D|A|495
8URY|1|D|A|496
8URY|1|D|G|497
8URY|1|D|A|498
8URY|1|D|A|499
8URY|1|D|G|500
*
8URY|1|D|C|545
8URY|1|D|A|546
8URY|1|D|A|547
8URY|1|D|G|548
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain J
- 30S ribosomal protein S4
- Chain R
- 30S ribosomal protein S12
Coloring options: