J5_8URY_004

3D structure

PDB id

8URY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 30 nt long spacer, and fMet-tRNA in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8URY|1|a|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8URY_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0462

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8URY|1|a|C|47
8URY|1|a|G|48
8URY|1|a|A|49
8URY|1|a|U|50
8URY|1|a|G|51
8URY|1|a|A|52
8URY|1|a|A|53
8URY|1|a|G|54
*
8URY|1|a|C|116
8URY|1|a|G|117
8URY|1|a|A|118
8URY|1|a|A|119
8URY|1|a|U|120
8URY|1|a|G|121
*
8URY|1|a|C|130
8URY|1|a|A|131
*
8URY|1|a|U|148
8URY|1|a|A|149
8URY|1|a|U|150
*
8URY|1|a|A|176
8URY|1|a|G|177
8URY|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34