J5_8UT0_003
3D structure
- PDB id
- 8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- AUAGUUCCUUUACUACAUGG*CAUGCUUAAAAUC*GAUG*CGA*UGGUU
- Length
- 45 nucleotides
- Bulged bases
- 8UT0|1|2|U|128, 8UT0|1|2|U|129, 8UT0|1|2|U|132, 8UT0|1|2|U|133, 8UT0|1|2|U|134, 8UT0|1|2|A|135, 8UT0|1|2|C|136, 8UT0|1|2|U|137, 8UT0|1|2|A|140, 8UT0|1|2|U|141, 8UT0|1|2|U|178
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8UT0|1|2|A|124
8UT0|1|2|U|125
8UT0|1|2|A|126
8UT0|1|2|G|127
8UT0|1|2|U|128
8UT0|1|2|U|129
8UT0|1|2|C|130
8UT0|1|2|C|131
8UT0|1|2|U|132
8UT0|1|2|U|133
8UT0|1|2|U|134
8UT0|1|2|A|135
8UT0|1|2|C|136
8UT0|1|2|U|137
8UT0|1|2|A|138
8UT0|1|2|C|139
8UT0|1|2|A|140
8UT0|1|2|U|141
8UT0|1|2|G|142
8UT0|1|2|G|143
*
8UT0|1|2|C|172
8UT0|1|2|A|173
8UT0|1|2|U|174
8UT0|1|2|G|175
8UT0|1|2|C|176
8UT0|1|2|U|177
8UT0|1|2|U|178
8UT0|1|2|A|179
8UT0|1|2|A|180
8UT0|1|2|A|181
8UT0|1|2|A|182
8UT0|1|2|U|183
8UT0|1|2|C|184
*
8UT0|1|2|G|201
8UT0|1|2|A|202
8UT0|1|2|U|203
8UT0|1|2|G|204
*
8UT0|1|2|C|263
8UT0|1|2|G|264
8UT0|1|2|A|265
*
8UT0|1|2|U|289
8UT0|1|2|G|290
8UT0|1|2|G|291
8UT0|1|2|U|292
8UT0|1|2|U|293
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SS
- 40S ribosomal protein S4-A
- Chain ST
- 40S ribosomal protein S6-A
- Chain SV
- 40S ribosomal protein S8-A
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