3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
AUAGUUCCUUUACUACAUGG*CAUGCUUAAAAUC*GAUG*CGA*UGGUU
Length
45 nucleotides
Bulged bases
8UT0|1|2|U|128, 8UT0|1|2|U|129, 8UT0|1|2|U|132, 8UT0|1|2|U|133, 8UT0|1|2|U|134, 8UT0|1|2|A|135, 8UT0|1|2|C|136, 8UT0|1|2|U|137, 8UT0|1|2|A|140, 8UT0|1|2|U|141, 8UT0|1|2|U|178
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UT0|1|2|A|124
8UT0|1|2|U|125
8UT0|1|2|A|126
8UT0|1|2|G|127
8UT0|1|2|U|128
8UT0|1|2|U|129
8UT0|1|2|C|130
8UT0|1|2|C|131
8UT0|1|2|U|132
8UT0|1|2|U|133
8UT0|1|2|U|134
8UT0|1|2|A|135
8UT0|1|2|C|136
8UT0|1|2|U|137
8UT0|1|2|A|138
8UT0|1|2|C|139
8UT0|1|2|A|140
8UT0|1|2|U|141
8UT0|1|2|G|142
8UT0|1|2|G|143
*
8UT0|1|2|C|172
8UT0|1|2|A|173
8UT0|1|2|U|174
8UT0|1|2|G|175
8UT0|1|2|C|176
8UT0|1|2|U|177
8UT0|1|2|U|178
8UT0|1|2|A|179
8UT0|1|2|A|180
8UT0|1|2|A|181
8UT0|1|2|A|182
8UT0|1|2|U|183
8UT0|1|2|C|184
*
8UT0|1|2|G|201
8UT0|1|2|A|202
8UT0|1|2|U|203
8UT0|1|2|G|204
*
8UT0|1|2|C|263
8UT0|1|2|G|264
8UT0|1|2|A|265
*
8UT0|1|2|U|289
8UT0|1|2|G|290
8UT0|1|2|G|291
8UT0|1|2|U|292
8UT0|1|2|U|293

Current chains

Chain 2
18S rRNA

Nearby chains

Chain SS
40S ribosomal protein S4-A
Chain ST
40S ribosomal protein S6-A
Chain SV
40S ribosomal protein S8-A

Coloring options:

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