Loop J5_8UT0

3D structure

PDB id: 8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.22 Å

Loop

Sequence: AUAGUUCCUUUACUACAUGG*CAUGCUUAAAAUC*GAUG*CGA*UGGUU
Length: 45 nucleotides
Bulged bases: 8UT0|1|2|U|128, 8UT0|1|2|U|129, 8UT0|1|2|U|132, 8UT0|1|2|U|133, 8UT0|1|2|U|134, 8UT0|1|2|A|135, 8UT0|1|2|C|136, 8UT0|1|2|U|137, 8UT0|1|2|A|140, 8UT0|1|2|U|141, 8UT0|1|2|U|178
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8UT0|1|2|A|124
8UT0|1|2|U|125
8UT0|1|2|A|126
8UT0|1|2|G|127
8UT0|1|2|U|128
8UT0|1|2|U|129
8UT0|1|2|C|130
8UT0|1|2|C|131
8UT0|1|2|U|132
8UT0|1|2|U|133
8UT0|1|2|U|134
8UT0|1|2|A|135
8UT0|1|2|C|136
8UT0|1|2|U|137
8UT0|1|2|A|138
8UT0|1|2|C|139
8UT0|1|2|A|140
8UT0|1|2|U|141
8UT0|1|2|G|142
8UT0|1|2|G|143
*
8UT0|1|2|C|172
8UT0|1|2|A|173
8UT0|1|2|U|174
8UT0|1|2|G|175
8UT0|1|2|C|176
8UT0|1|2|U|177
8UT0|1|2|U|178
8UT0|1|2|A|179
8UT0|1|2|A|180
8UT0|1|2|A|181
8UT0|1|2|A|182
8UT0|1|2|U|183
8UT0|1|2|C|184
*
8UT0|1|2|G|201
8UT0|1|2|A|202
8UT0|1|2|U|203
8UT0|1|2|G|204
*
8UT0|1|2|C|263
8UT0|1|2|G|264
8UT0|1|2|A|265
*
8UT0|1|2|U|289
8UT0|1|2|G|290
8UT0|1|2|G|291
8UT0|1|2|U|292
8UT0|1|2|U|293

Current chains

Chain 2: 18S rRNA

Nearby chains

Chain SS: 40S ribosomal protein S4-A
Chain ST: 40S ribosomal protein S6-A
Chain SV: 40S ribosomal protein S8-A

J5_8UT0_003