J5_8UT0_005
3D structure
- PDB id
- 8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- ACUUUG*UUUCCUU*GACUUU*AUAGAAUAGGA*UAAUGAU
- Length
- 37 nucleotides
- Bulged bases
- 8UT0|1|2|U|639, 8UT0|1|2|U|694, 8UT0|1|2|C|696, 8UT0|1|2|C|697, 8UT0|1|2|U|813, 8UT0|1|2|G|815, 8UT0|1|2|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8UT0|1|2|A|636
8UT0|1|2|C|637
8UT0|1|2|U|638
8UT0|1|2|U|639
8UT0|1|2|U|640
8UT0|1|2|G|641
*
8UT0|1|2|U|693
8UT0|1|2|U|694
8UT0|1|2|U|695
8UT0|1|2|C|696
8UT0|1|2|C|697
8UT0|1|2|U|698
8UT0|1|2|U|699
*
8UT0|1|2|G|739
8UT0|1|2|A|740
8UT0|1|2|C|741
8UT0|1|2|U|742
8UT0|1|2|U|743
8UT0|1|2|U|744
*
8UT0|1|2|A|807
8UT0|1|2|U|808
8UT0|1|2|A|809
8UT0|1|2|G|810
8UT0|1|2|A|811
8UT0|1|2|A|812
8UT0|1|2|U|813
8UT0|1|2|A|814
8UT0|1|2|G|815
8UT0|1|2|G|816
8UT0|1|2|A|817
*
8UT0|1|2|U|854
8UT0|1|2|A|855
8UT0|1|2|A|856
8UT0|1|2|U|857
8UT0|1|2|G|858
8UT0|1|2|A|859
8UT0|1|2|U|860
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain LT
- 60S ribosomal protein L19-A
- Chain SS
- 40S ribosomal protein S4-A
- Chain SU
- 40S ribosomal protein S7-A
- Chain SX
- 40S ribosomal protein S11-A
- Chain SY
- 40S ribosomal protein S13
- Chain Sb
- 40S ribosomal protein S22-A
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