J5_8UT0_010
3D structure
- PDB id
- 8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8UT0|1|A|A|2404, 8UT0|1|A|A|2817, 8UT0|1|A|G|2874, 8UT0|1|A|U|2978, 8UT0|1|A|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8UT0|1|A|A|2399
8UT0|1|A|G|2400
8UT0|1|A|A|2401
8UT0|1|A|A|2402
8UT0|1|A|G|2403
8UT0|1|A|A|2404
8UT0|1|A|C|2405
8UT0|1|A|C|2406
*
8UT0|1|A|G|2815
8UT0|1|A|G|2816
8UT0|1|A|A|2817
8UT0|1|A|U|2818
8UT0|1|A|A|2819
8UT0|1|A|A|2820
8UT0|1|A|C|2821
8UT0|1|A|U|2822
8UT0|1|A|G|2823
*
8UT0|1|A|C|2867
8UT0|1|A|U|2868
8UT0|1|A|U|2869
8UT0|1|A|C|2870
8UT0|1|A|G|2871
8UT0|1|A|A|2872
8UT0|1|A|U|2873
8UT0|1|A|G|2874
8UT0|1|A|U|2875
8UT0|1|A|C|2876
*
8UT0|1|A|G|2951
8UT0|1|A|G|2952
8UT0|1|A|U|2953
8UT0|1|A|U|2954
8UT0|1|A|U|2955
8UT0|1|A|A|2956
8UT0|1|A|G|2957
*
8UT0|1|A|U|2975
8UT0|1|A|A|2976
8UT0|1|A|G|2977
8UT0|1|A|U|2978
8UT0|1|A|U|2979
8UT0|1|A|U|2980
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain LE
- 60S ribosomal protein L3
- Chain LF
- 60S ribosomal protein L4-A
- Chain LL
- 60S ribosomal protein L10
- Chain LR
- 60S ribosomal protein L17-A
- Chain Lc
- 60S ribosomal protein L28
- Chain Ld
- 60S ribosomal protein L29
- Chain Ls
- Translation factor eIF5A
- Chain m
- Transfer RNA; tRNA
- Chain n
- Transfer RNA; tRNA
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1 (N-terminal 3xFLAG tag)
Coloring options: