J5_8UU4_005
3D structure
- PDB id
- 8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8UU4|1|A|G|1791, 8UU4|1|A|G|1796
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8UU4_005 not in the Motif Atlas
- Homologous match to J5_4WF9_005
- Geometric discrepancy: 0.0843
- The information below is about J5_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
8UU4|1|A|G|1723
8UU4|1|A|C|1724
8UU4|1|A|A|1725
8UU4|1|A|A|1726
8UU4|1|A|A|1727
8UU4|1|A|A|1728
8UU4|1|A|U|1729
8UU4|1|A|G|1730
8UU4|1|A|A|1731
*
8UU4|1|A|U|1755
8UU4|1|A|G|1756
*
8UU4|1|A|C|1784
8UU4|1|A|C|1785
*
8UU4|1|A|G|1789
8UU4|1|A|U|1790
8UU4|1|A|G|1791
8UU4|1|A|A|1792
8UU4|1|A|A|1793
8UU4|1|A|U|1794
8UU4|1|A|A|1795
8UU4|1|A|G|1796
8UU4|1|A|G|1797
*
8UU4|1|A|C|2021
8UU4|1|A|A|2022
8UU4|1|A|C|2023
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL3
- Chain M
- Large ribosomal subunit protein uL14
- Chain R
- Large ribosomal subunit protein bL19
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: