J5_8UU8_001

3D structure

PDB id

8UU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

8UU8|1|A|A|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8UU8_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.089

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8UU8|1|A|C|47
8UU8|1|A|G|48
8UU8|1|A|A|49
8UU8|1|A|A|50
8UU8|1|A|G|51
8UU8|1|A|A|52
8UU8|1|A|A|53
8UU8|1|A|G|54
*
8UU8|1|A|C|115
8UU8|1|A|G|116
8UU8|1|A|A|117
8UU8|1|A|A|118
8UU8|1|A|U|119
8UU8|1|A|G|120
*
8UU8|1|A|C|129
8UU8|1|A|A|130
*
8UU8|1|A|U|149
8UU8|1|A|A|150
8UU8|1|A|U|151
*
8UU8|1|A|A|177
8UU8|1|A|A|178
8UU8|1|A|G|179

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34

Chain V

Large ribosomal subunit protein uL23