J5_8UU8_002

3D structure

PDB id

8UU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAAC*GGGUUGUA*UGAGUAC*GGAAUCCG*CAAG

Length

33 nucleotides

Bulged bases

8UU8|1|A|U|300, 8UU8|1|A|C|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UU8|1|A|C|270
8UU8|1|A|C|271
8UU8|1|A|A|272
8UU8|1|A|A|273
8UU8|1|A|A|274
8UU8|1|A|C|275
*
8UU8|1|A|G|294
8UU8|1|A|G|295
8UU8|1|A|G|296
8UU8|1|A|U|297
8UU8|1|A|U|298
8UU8|1|A|G|299
8UU8|1|A|U|300
8UU8|1|A|A|301
*
8UU8|1|A|U|415
8UU8|1|A|G|416
8UU8|1|A|A|417
8UU8|1|A|G|418
8UU8|1|A|U|419
8UU8|1|A|A|420
8UU8|1|A|C|421
*
8UU8|1|A|G|445
8UU8|1|A|G|446
8UU8|1|A|A|447
8UU8|1|A|A|448
8UU8|1|A|U|449
8UU8|1|A|C|450
8UU8|1|A|C|451
8UU8|1|A|G|452
*
8UU8|1|A|C|467
8UU8|1|A|A|468
8UU8|1|A|A|469
8UU8|1|A|G|470

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Z

Large ribosomal subunit protein bL28