J5_8UU9_009
3D structure
- PDB id
- 8UU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8UU9|1|a|A|60, 8UU9|1|a|A|107, 8UU9|1|a|C|360
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8UU9_009 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.0924
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8UU9|1|a|C|58
8UU9|1|a|A|59
8UU9|1|a|A|60
8UU9|1|a|G|61
*
8UU9|1|a|C|104
8UU9|1|a|G|105
8UU9|1|a|G|106
8UU9|1|a|A|107
8UU9|1|a|C|108
8UU9|1|a|G|109
8UU9|1|a|G|110
8UU9|1|a|G|111
*
8UU9|1|a|C|322
8UU9|1|a|A|323
8UU9|1|a|C|324
*
8UU9|1|a|G|345
8UU9|1|a|A|346
8UU9|1|a|C|347
*
8UU9|1|a|G|358
8UU9|1|a|G|359
8UU9|1|a|C|360
8UU9|1|a|A|361
8UU9|1|a|G|362
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain M
- Large ribosomal subunit protein uL14
- Chain R
- Large ribosomal subunit protein bL19
- Chain p
- Small ribosomal subunit protein bS16
- Chain t
- Small ribosomal subunit protein bS20
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