J5_8UVR_001

3D structure

PDB id

8UVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

8UVR|1|1A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8UVR_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0467

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.2

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8UVR|1|1A|C|47
8UVR|1|1A|G|48
8UVR|1|1A|A|49
8UVR|1|1A|U|50
8UVR|1|1A|G|51
8UVR|1|1A|A|52
8UVR|1|1A|A|53
8UVR|1|1A|G|54
*
8UVR|1|1A|C|116
8UVR|1|1A|G|117
8UVR|1|1A|A|118
8UVR|1|1A|A|119
8UVR|1|1A|U|120
8UVR|1|1A|G|121
*
8UVR|1|1A|C|130
8UVR|1|1A|G|131
*
8UVR|1|1A|C|148
8UVR|1|1A|A|149
8UVR|1|1A|C|150
*
8UVR|1|1A|G|176
8UVR|1|1A|G|177
8UVR|1|1A|G|178

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23