J5_8UVS_018

3D structure

PDB id

8UVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8UVS_018 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0808

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

8UVS|1|2a|C|36
8UVS|1|2a|U|37
8UVS|1|2a|G|38
8UVS|1|2a|G|39
*
8UVS|1|2a|C|403
8UVS|1|2a|U|404
8UVS|1|2a|U|405
8UVS|1|2a|G|406
*
8UVS|1|2a|C|436
8UVS|1|2a|U|437
8UVS|1|2a|G|438
8UVS|1|2a|A|439
8UVS|1|2a|A|441
8UVS|1|2a|C|442
*
8UVS|1|2a|G|492
8UVS|1|2a|G|493
8UVS|1|2a|U|494
8UVS|1|2a|A|495
8UVS|1|2a|A|496
8UVS|1|2a|U|498
8UVS|1|2a|A|499
8UVS|1|2a|G|500
*
8UVS|1|2a|C|545
8UVS|1|2a|G|546
8UVS|1|2a|A|547
8UVS|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12