3D structure

PDB id
8UZ3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with unmodified e*/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC
Length
37 nucleotides
Bulged bases
8UZ3|1|1|A|2062, 8UZ3|1|1|A|2448, 8UZ3|1|1|U|2449, 8UZ3|1|1|U|2506, 8UZ3|1|1|U|2609
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UZ3|1|1|G|2057
8UZ3|1|1|A|2058
8UZ3|1|1|A|2059
8UZ3|1|1|A|2060
8UZ3|1|1|G|2061
8UZ3|1|1|A|2062
8UZ3|1|1|C|2063
8UZ3|1|1|C|2064
*
8UZ3|1|1|G|2446
8UZ3|1|1|G|2447
8UZ3|1|1|A|2448
8UZ3|1|1|U|2449
8UZ3|1|1|A|2450
8UZ3|1|1|A|2451
8UZ3|1|1|C|2452
8UZ3|1|1|A|2453
*
8UZ3|1|1|U|2500
8UZ3|1|1|C|2501
8UZ3|1|1|G|2502
8UZ3|1|1|A|2503
8UZ3|1|1|U|2504
8UZ3|1|1|G|2505
8UZ3|1|1|U|2506
8UZ3|1|1|C|2507
*
8UZ3|1|1|G|2582
8UZ3|1|1|G|2583
8UZ3|1|1|U|2584
8UZ3|1|1|U|2585
8UZ3|1|1|U|2586
8UZ3|1|1|A|2587
8UZ3|1|1|G|2588
*
8UZ3|1|1|C|2606
8UZ3|1|1|G|2607
8UZ3|1|1|G|2608
8UZ3|1|1|U|2609
8UZ3|1|1|C|2610
8UZ3|1|1|C|2611

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L2
Chain C
50S ribosomal protein L3
Chain D
50S ribosomal protein L4
Chain L
50S ribosomal protein L15
Chain M
50S ribosomal protein L16
Chain S
50S ribosomal protein L22
Chain b
50S ribosomal protein L32

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.2973 s